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Crystal structure of exo-beta-1,3-galactanase from Phanerochaete chrysosporium Pc1,3Gal43A apo form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 2.1 M ammonium sulfate,
0.1 M citrate buffer pH 5.5. 2 VAPOR DIFFUSION 5.5 293 16% (w/v) polyethylene glycol (PEG) 10000
95 mM ammonium sulfate
95 mM bis-tris
4.8% (v/v) glycerol
Crystal Properties Matthews coefficient Solvent content 2.05 40.03 2.47 50.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.47 α = 72.03 b = 66.262 β = 84.68 c = 74.021 γ = 82.15
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 315 2008-02-11 M SINGLE WAVELENGTH 2 2 x-ray 95 CCD ADSC QUANTUM 4r 2008-11-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.90646 Photon Factory BL-5A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 0.97882,0.97950,0.98300,0.96400 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 95.6 0.054 22.4 1.9 136692
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 89 0.37 2.8 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 1.4 8 1.96 136655 6862 95.46 0.1562 0.1547 0.1547 0.1856 0.1853 Random selection 17.1719
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6436 Nucleic Acid Atoms Solvent Atoms 1242 Heterogen Atoms 109
Software Software Software Name Purpose PHENIX refinement REFMAC refinement Coot model building MOLREP phasing ARP/wARP model building SOLVE phasing RESOLVE phasing DENZO data reduction SCALEPACK data scaling