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Varicella-zoster virus capsid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ZZ8
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.9956 f_angle_d 0.5756 f_chiral_restr 0.0413 f_plane_restr 0.0033 f_bond_d 0.0031
Sample Human alphaherpesvirus 3
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details blot for 2 seconds before plunging
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 311236 Reported Resolution (Å) 3.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (5ZZ8, 5ZZ8, 5ZZ8, 5ZZ8) Refinement Space REAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1500 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 59000 Calibrated Magnification 59000 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1 MODEL FITTING UCSF Chimera 1.13.1 MODEL REFINEMENT PHENIX 1.17 MODEL REFINEMENT Coot 0.8.9.2 INITIAL EULER ASSIGNMENT RELION 3.0.8 FINAL EULER ASSIGNMENT RELION 3.0.8 CLASSIFICATION RELION 3.0.8 RECONSTRUCTION RELION 3.0.8
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE 94640 Images were low-pass to 15 angstrom to facilitated particle picking.