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Mevo lectin- Native form-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZNO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7 296 2.0 M ammonium citrate tribasic, 0.1 M
bis tris propane pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.74 55.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.61 α = 90 b = 168.22 β = 90 c = 169.02 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2018-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU ULTRAX 18 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 59.7 100 0.22 0.99 7.9 9.5 41843
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 100 0.85 2 14.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZNO 2.6 59.687 41745 2092 99.828 0.296 0.2951 0.2947 0.3064 0.3023 58.909
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.194 -2.59 0.396
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.209 r_dihedral_angle_3_deg 16.864 r_dihedral_angle_4_deg 10.241 r_dihedral_angle_1_deg 9.07 r_lrange_it 3.304 r_lrange_other 3.283 r_angle_refined_deg 1.781 r_angle_other_deg 1.291 r_mcangle_it 0.885 r_mcangle_other 0.885
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.209 r_dihedral_angle_3_deg 16.864 r_dihedral_angle_4_deg 10.241 r_dihedral_angle_1_deg 9.07 r_lrange_it 3.304 r_lrange_other 3.283 r_angle_refined_deg 1.781 r_angle_other_deg 1.291 r_mcangle_it 0.885 r_mcangle_other 0.885 r_scangle_it 0.846 r_scangle_other 0.846 r_scbond_it 0.545 r_scbond_other 0.545 r_mcbond_it 0.515 r_mcbond_other 0.515 r_symmetry_xyhbond_nbd_refined 0.47 r_symmetry_nbd_refined 0.368 r_nbd_other 0.242 r_nbd_refined 0.193 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.134 r_ncsr_local_group_8 0.082 r_symmetry_nbtor_other 0.079 r_ncsr_local_group_13 0.079 r_ncsr_local_group_16 0.078 r_ncsr_local_group_10 0.076 r_ncsr_local_group_12 0.074 r_ncsr_local_group_7 0.073 r_ncsr_local_group_18 0.072 r_ncsr_local_group_2 0.071 r_ncsr_local_group_9 0.071 r_chiral_restr 0.07 r_ncsr_local_group_3 0.07 r_ncsr_local_group_11 0.069 r_ncsr_local_group_15 0.069 r_ncsr_local_group_5 0.067 r_ncsr_local_group_19 0.067 r_ncsr_local_group_21 0.066 r_ncsr_local_group_17 0.065 r_ncsr_local_group_4 0.061 r_ncsr_local_group_20 0.06 r_ncsr_local_group_14 0.057 r_ncsr_local_group_1 0.052 r_ncsr_local_group_6 0.044 r_xyhbond_nbd_other 0.021 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7050 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing