X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7BSB 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH62966%(v/v) Tacsimate pH 6.0, 0.1 M MES monohydrate pH 6.0, 25%(w/v) polyethylene glycol 4000
Crystal Properties
Matthews coefficientSolvent content
3.3657.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.77α = 90
b = 157.22β = 90
c = 163.18γ = 90
Symmetry
Space GroupP 2 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV2018-12-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU ULTRAX 181.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.754.39990.190.987739930
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.851000.681.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT7BSB2.754.39399302027990.2110.20990.233637.967
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.156-0.532-2.624
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.264
r_dihedral_angle_4_deg14.943
r_dihedral_angle_3_deg14.628
r_lrange_it9.131
r_lrange_other9.131
r_dihedral_angle_1_deg8.437
r_scangle_it5.882
r_scangle_other5.882
r_mcangle_it5.351
r_mcangle_other5.351
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.264
r_dihedral_angle_4_deg14.943
r_dihedral_angle_3_deg14.628
r_lrange_it9.131
r_lrange_other9.131
r_dihedral_angle_1_deg8.437
r_scangle_it5.882
r_scangle_other5.882
r_mcangle_it5.351
r_mcangle_other5.351
r_scbond_it3.923
r_scbond_other3.922
r_mcbond_other3.426
r_mcbond_it3.425
r_angle_other_deg2.427
r_angle_refined_deg1.663
r_symmetry_nbd_refined0.298
r_nbd_other0.271
r_symmetry_nbd_other0.21
r_symmetry_xyhbond_nbd_refined0.201
r_nbd_refined0.178
r_nbtor_refined0.168
r_xyhbond_nbd_refined0.133
r_symmetry_xyhbond_nbd_other0.119
r_symmetry_nbtor_other0.079
r_chiral_restr0.064
r_bond_other_d0.037
r_chiral_restr_other0.013
r_bond_refined_d0.01
r_gen_planes_other0.008
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7220
Nucleic Acid Atoms
Solvent Atoms61
Heterogen Atoms162

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing