7BQN

Solution NMR structure of fold-C Rei; de novo designed protein with an asymmetric all-alpha topology


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 800
22D 1H-13C HSQC aliphatic0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 800
32D 1H-13C HSQC aromatic0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 800
43D BEST-HNCO0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 800
53D BEST-HNCACB0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 800
63D BEST-HN(CO)CACB0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 800
83D HCCH-TOCSY aliphatic0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 600
73D 1H-15N NOESY0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 600
113D 1H-13C NOESY aliphatic0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 600
103D 1H-13C NOESY aromatic0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 600
92D 1H-15N HSQC IPAP0.9 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 950
122D 1H-15N HSQC IPAP0.2 mM [U-100% 13C; U-100% 15N] Rei, 4.5 mM potassium phosphate, 5.5 mM sodium phosphate, 50 mM sodium chloride, 7 mg/mL Pf1 phage95% H2O/5% D2O56.6 mM6.891 atm303Bruker AVANCE III 950
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE III800
3BrukerAVANCE III950
NMR Refinement
MethodDetailsSoftware
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.2Bruker Biospin
2processingNMRPipe2017Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3peak pickingMAGRO2.01.24Updated version of Kujira (Kobayashi, N. et al., 2007)
4data analysisNMRView9.0Johnson, One Moon Scientific
5data analysisTALOS2017Cornilescu, Delaglio and Bax
6chemical shift assignmentCYANA3.98Guntert, Mumenthaler and Wuthrich
7structure calculationCYANA3.98Guntert, Mumenthaler and Wuthrich
8refinementAmber12Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman