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Dimerization of SAV1 WW tandem
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2YSB 2YSB, 2DWV experimental model PDB 2DWV 2YSB, 2DWV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 2% v/v 1,4-Dioxane, 20% w/v PEG 3350 and 100 mM Tris-HCl (pH 8.0)
Crystal Properties Matthews coefficient Solvent content 2.44 49.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.715 α = 90 b = 46.715 β = 90 c = 83.151 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-11-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97915 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 100 0.95 48.6 18.9 11842 27.9061568136
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 0.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2YSB, 2DWV 1.70037617383 27.717 11842 1194 98.1760902006 0.198462671177 0.195975016281 0.1971 0.219879832605 0.2198 36.7549876993
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.7129014355 f_angle_d 0.971184580388 f_chiral_restr 0.0430957263113 f_bond_d 0.00678832420286 f_plane_restr 0.00635232196708
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 694 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms 6
Software Software Software Name Purpose PHENIX refinement HKL-3000 data scaling PHASER phasing HKL-3000 data reduction