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Mutant I56F of recombinant bovine beta-lactoglobulin in complex with tetracaine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 2.4 M ammonium sulfate in 0.5 M Tris-HCl pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.03 39.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.831 α = 90 b = 69.665 β = 90 c = 79.239 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD AGILENT ATLAS CCD 2015-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.5406
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 14.62 99.8 0.108 0.12 0.051 0.996 12.3 5.4 28251
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 100 0.812 0.933 0.455 0.701 1.5 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BSY 1.8 14.62 28212 1032 99.745 0.193 0.19264 0.1915 0.1999 0.2215 0.2288 RANDOM 15.566
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.006 0.014 -0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.603 r_dihedral_angle_3_deg 14.878 r_dihedral_angle_4_deg 14.131 r_dihedral_angle_1_deg 6.746 r_lrange_it 4.342 r_lrange_other 4.307 r_scangle_other 2.056 r_scangle_it 2.052 r_mcangle_other 1.641 r_mcangle_it 1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.603 r_dihedral_angle_3_deg 14.878 r_dihedral_angle_4_deg 14.131 r_dihedral_angle_1_deg 6.746 r_lrange_it 4.342 r_lrange_other 4.307 r_scangle_other 2.056 r_scangle_it 2.052 r_mcangle_other 1.641 r_mcangle_it 1.64 r_angle_refined_deg 1.612 r_angle_other_deg 1.373 r_scbond_other 1.244 r_scbond_it 1.243 r_mcbond_it 0.96 r_mcbond_other 0.955 r_nbd_other 0.264 r_symmetry_nbd_refined 0.243 r_symmetry_xyhbond_nbd_refined 0.204 r_symmetry_nbd_other 0.193 r_nbd_refined 0.191 r_xyhbond_nbd_refined 0.162 r_nbtor_refined 0.16 r_ncsr_local_group_1 0.13 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2396 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 34
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction CrysalisPro data reduction PHASER phasing