7BF8

Mutant I56F of recombinant bovine beta-lactoglobulin in complex with tetracaine


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1BSY 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82932.4 M ammonium sulfate in 0.5 M Tris-HCl pH 8.0
Crystal Properties
Matthews coefficientSolvent content
2.0339.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.831α = 90
b = 69.665β = 90
c = 79.239γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDAGILENT ATLAS CCD2015-01-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEAgilent SuperNova1.5406

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.814.6299.80.1080.120.0510.99612.35.428251
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.841000.8120.9330.4550.7011.54.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1BSY1.814.6228212103299.7450.1930.192640.19150.2215RANDOM15.566
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0060.014-0.007
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.603
r_dihedral_angle_3_deg14.878
r_dihedral_angle_4_deg14.131
r_dihedral_angle_1_deg6.746
r_lrange_it4.342
r_lrange_other4.307
r_scangle_other2.056
r_scangle_it2.052
r_mcangle_other1.641
r_mcangle_it1.64
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.603
r_dihedral_angle_3_deg14.878
r_dihedral_angle_4_deg14.131
r_dihedral_angle_1_deg6.746
r_lrange_it4.342
r_lrange_other4.307
r_scangle_other2.056
r_scangle_it2.052
r_mcangle_other1.641
r_mcangle_it1.64
r_angle_refined_deg1.612
r_angle_other_deg1.373
r_scbond_other1.244
r_scbond_it1.243
r_mcbond_it0.96
r_mcbond_other0.955
r_nbd_other0.264
r_symmetry_nbd_refined0.243
r_symmetry_xyhbond_nbd_refined0.204
r_symmetry_nbd_other0.193
r_nbd_refined0.191
r_xyhbond_nbd_refined0.162
r_nbtor_refined0.16
r_ncsr_local_group_10.13
r_symmetry_nbtor_other0.085
r_chiral_restr0.083
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2396
Nucleic Acid Atoms
Solvent Atoms318
Heterogen Atoms34

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CrysalisProdata reduction
PHASERphasing