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Mutant L58F of recombinant bovine beta-lactoglobulin in complex with tetracaine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 2.8 M ammonium sulfate in 0.5 M Tris-HCl pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.52 51.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.344 α = 90 b = 53.344 β = 90 c = 111.869 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD AGILENT ATLAS CCD 2014-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 13.77 98.8 0.061 0.074 0.041 0.997 7.9 2.6 11130
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 96.8 0.285 0.391 0.265 0.805 1.6 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BSY 2.1 13.769 11107 1049 98.37 0.207 0.20738 0.2029 0.2112 0.2491 0.2631 RANDOM 31.557
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.014 0.007 0.014 -0.045
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.33 r_dihedral_angle_3_deg 15.441 r_dihedral_angle_4_deg 15.38 r_dihedral_angle_1_deg 7.576 r_lrange_it 5.187 r_lrange_other 5.157 r_scangle_it 3.306 r_scangle_other 3.302 r_mcangle_it 2.88 r_mcangle_other 2.879
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.33 r_dihedral_angle_3_deg 15.441 r_dihedral_angle_4_deg 15.38 r_dihedral_angle_1_deg 7.576 r_lrange_it 5.187 r_lrange_other 5.157 r_scangle_it 3.306 r_scangle_other 3.302 r_mcangle_it 2.88 r_mcangle_other 2.879 r_scbond_it 1.935 r_scbond_other 1.931 r_mcbond_it 1.743 r_mcbond_other 1.74 r_angle_refined_deg 1.722 r_angle_other_deg 1.232 r_nbd_other 0.228 r_nbd_refined 0.212 r_symmetry_xyhbond_nbd_refined 0.212 r_symmetry_nbd_refined 0.201 r_symmetry_nbd_other 0.186 r_xyhbond_nbd_refined 0.183 r_nbtor_refined 0.161 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1210 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 24
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction CrysalisPro data reduction PHASER phasing