X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7B53 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52940.1M citrate pH 5.5 19% PEG4K 20% 2-propanol
Crystal Properties
Matthews coefficientSolvent content
2.2845.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.517α = 96.93
b = 58.546β = 91.45
c = 74.194γ = 104.74
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2018-07-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.91587DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1247.7996.30.9913.21.851879
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.122.230.387

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT7B532.1247.7949220265996.270.226730.224950.25929RANDOM47.238
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.522.1-0.50.941.39-1.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.99
r_dihedral_angle_4_deg14.139
r_dihedral_angle_3_deg14.006
r_dihedral_angle_1_deg5.086
r_long_range_B_refined4.738
r_long_range_B_other4.703
r_scangle_other2.746
r_mcangle_it2.585
r_mcangle_other2.585
r_scbond_it1.596
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.99
r_dihedral_angle_4_deg14.139
r_dihedral_angle_3_deg14.006
r_dihedral_angle_1_deg5.086
r_long_range_B_refined4.738
r_long_range_B_other4.703
r_scangle_other2.746
r_mcangle_it2.585
r_mcangle_other2.585
r_scbond_it1.596
r_scbond_other1.596
r_mcbond_it1.509
r_mcbond_other1.509
r_angle_refined_deg1.027
r_angle_other_deg0.947
r_chiral_restr0.052
r_bond_refined_d0.005
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7208
Nucleic Acid Atoms
Solvent Atoms267
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing