☰ Navigation Tabs
Crystal structure of MurE from E.coli in complex with Z1373445602
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7B53
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 294 0.1M citrate pH 5.5
19% PEG4K
14% 2-propanol
Crystal Properties Matthews coefficient Solvent content 2.26 45.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.19 α = 97.082 b = 58.426 β = 91.436 c = 74.229 γ = 104.723
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2018-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 73.51 91.6 0.998 7.9 1.8 56353
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.13 0.424
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7B53 2.069 73.51 55045 2812 96.263 0.206 0.2035 0.2088 0.2588 0.2599 44.926
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.572 0.923 -0.083 0.932 2.268 -1.624
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.901 r_dihedral_angle_4_deg 15.73 r_dihedral_angle_3_deg 15.034 r_lrange_it 8.238 r_lrange_other 8.227 r_dihedral_angle_1_deg 7.179 r_scangle_it 6.314 r_scangle_other 6.314 r_mcangle_it 5.204 r_mcangle_other 5.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.901 r_dihedral_angle_4_deg 15.73 r_dihedral_angle_3_deg 15.034 r_lrange_it 8.238 r_lrange_other 8.227 r_dihedral_angle_1_deg 7.179 r_scangle_it 6.314 r_scangle_other 6.314 r_mcangle_it 5.204 r_mcangle_other 5.204 r_scbond_it 4.203 r_scbond_other 4.202 r_mcbond_it 3.695 r_mcbond_other 3.694 r_angle_refined_deg 1.529 r_angle_other_deg 1.284 r_nbd_refined 0.208 r_nbd_other 0.18 r_xyhbond_nbd_refined 0.178 r_symmetry_nbd_other 0.177 r_symmetry_xyhbond_nbd_refined 0.173 r_symmetry_nbd_refined 0.17 r_nbtor_refined 0.152 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.067 r_symmetry_xyhbond_nbd_other 0.053 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7188 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing