☰ Navigation Tabs
Cryo-EM of Aedes Aegypti Toll5A dimer bound to Spz1C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LXR
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.5496 f_angle_d 0.6571 f_chiral_restr 0.0427 f_bond_d 0.0039 f_plane_restr 0.0038
Sample Cryo-EM of Aedes Aegypti Toll5A dimer bound to Spz1C Sample Components Toll-like receptor AAEL013433-PA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK I Cryogen Name ETHANE Sample Vitrification Details Blotting force 0
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 40153 Reported Resolution (Å) 4.23 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (4LXR, 4LXR, 4LXR) Refinement Space REAL Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 51.1
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2700 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU CTF CORRECTION Warp MODEL FITTING Coot 0.9 INITIAL EULER ASSIGNMENT cryoSPARC RECONSTRUCTION cryoSPARC MODEL REFINEMENT PHENIX 1.20rc3_4406
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 507268