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The Fk1 domain of FKBP51 in complex with (2'R,5'S,12'R)-12'-cyclohexyl-2'-[2-(3,4-dimethoxyphenyl)ethyl]-3',19'-dioxa-10',13',16'-triazaspiro[cyclopropane-1,15'- tricyclo[18.3.1.0-5,10]tetracosane]-1'(24'),20',22'-triene-4',11',14',17'-tetrone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 32% PEG-3350, 0.2 M NH4-acetate and HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.28 46.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.41 α = 90 b = 49.46 β = 90 c = 59.59 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.972422 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 38.06 99.8 0.035 0.05 0.035 0.998 9.8 1.9 44967
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.18 99.3 0.394 0.557 0.394 0.551 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3O5Q 1.16 29.8 42797 2243 99.99 0.1444 0.1428 0.1424 0.1753 0.1736 RANDOM 17.696
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 0.46 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.173 r_sphericity_free 16.612 r_dihedral_angle_4_deg 12.856 r_dihedral_angle_3_deg 12.515 r_sphericity_bonded 8.674 r_dihedral_angle_1_deg 8.029 r_rigid_bond_restr 2.306 r_angle_refined_deg 1.971 r_angle_other_deg 1.41 r_chiral_restr 0.478
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.173 r_sphericity_free 16.612 r_dihedral_angle_4_deg 12.856 r_dihedral_angle_3_deg 12.515 r_sphericity_bonded 8.674 r_dihedral_angle_1_deg 8.029 r_rigid_bond_restr 2.306 r_angle_refined_deg 1.971 r_angle_other_deg 1.41 r_chiral_restr 0.478 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.008 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 982 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 48
Software Software Software Name Purpose XDS data reduction Aimless data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction