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The structure of Artemis variant H35D
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TT5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277.15 0.1M Sodium Citrate pH 5.5, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.93 36.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.968 α = 82.43 b = 48.046 β = 76.01 c = 48.445 γ = 87.34
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2020-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 47.62 97.4 0.058 0.997 13.4 3.7 33409
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 95.4 0.279 0.927 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6TT5 1.7 47.62 31745 1662 97.35 0.1908 0.1897 0.1982 0.2102 0.2181 RANDOM 18.404
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 -0.47 0.2 0.19 0.28 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.115 r_dihedral_angle_4_deg 17.332 r_dihedral_angle_3_deg 12.457 r_dihedral_angle_1_deg 6.068 r_angle_other_deg 3.705 r_angle_refined_deg 1.315 r_chiral_restr 0.079 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.115 r_dihedral_angle_4_deg 17.332 r_dihedral_angle_3_deg 12.457 r_dihedral_angle_1_deg 6.068 r_angle_other_deg 3.705 r_angle_refined_deg 1.315 r_chiral_restr 0.079 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2836 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 33
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction DIALS data reduction