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The structure of Artemis variant H33A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TT5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277.15 0.1 M Sodium Citrate pH 5.5, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.91 35.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.966 α = 82.51 b = 47.897 β = 75.94 c = 48.373 γ = 87.73
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2020-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 35.53 94.2 0.061 0.998 11.3 3.6 41612
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.59 63.7 0.374 0.841 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6TT5 1.56 35.53 39478 2119 94.12 0.1895 0.1883 0.198 0.2125 0.2161 RANDOM 17.479
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 -0.53 0.32 -0.2 0.4 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.784 r_dihedral_angle_4_deg 18.432 r_dihedral_angle_3_deg 11.315 r_dihedral_angle_1_deg 6.04 r_angle_refined_deg 1.278 r_angle_other_deg 0.902 r_chiral_restr 0.081 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.784 r_dihedral_angle_4_deg 18.432 r_dihedral_angle_3_deg 11.315 r_dihedral_angle_1_deg 6.04 r_angle_refined_deg 1.278 r_angle_other_deg 0.902 r_chiral_restr 0.081 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2802 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing PDB_EXTRACT data extraction DIALS data reduction