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Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) I52T variant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RHF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M Lithium sulfate
0.1M BIS-Tris pH 5.5
25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.52 51.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.866 α = 90 b = 110.784 β = 90 c = 39.094 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-03-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.999987 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48.49 99.6 0.152 0.164 0.059 0.996 9.3 7.4 19058
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 100 0.913 0.977 0.346 0.824 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6RHF 1.9 48.49 18079 942 99.4 0.1813 0.1797 0.1897 0.2132 0.222 RANDOM 19.655
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.25 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.336 r_dihedral_angle_4_deg 14.016 r_dihedral_angle_3_deg 11.695 r_dihedral_angle_1_deg 6.699 r_angle_refined_deg 1.222 r_angle_other_deg 1.198 r_chiral_restr 0.038 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_gen_planes_other 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.336 r_dihedral_angle_4_deg 14.016 r_dihedral_angle_3_deg 11.695 r_dihedral_angle_1_deg 6.699 r_angle_refined_deg 1.222 r_angle_other_deg 1.198 r_chiral_restr 0.038 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_gen_planes_other 0.001 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1605 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms 73
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing