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6-dimethylallyl tryptophan synthase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5INJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 200 mM Calcium acetate, 26% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.18 43.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.355 α = 90 b = 85.682 β = 99.764 c = 74.538 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2019-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00767 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 46.7 99.8 0.1 0.99 10.9 4.5 78991 27.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.75 1 0.64
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5INJ 1.652 46.667 78985 1580 99.786 0.186 0.1858 0.1966 0.2185 0.2235 24.054
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.791 1.129 -1.285 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.425 r_dihedral_angle_4_deg 17.17 r_dihedral_angle_3_deg 13.387 r_dihedral_angle_1_deg 8.204 r_lrange_it 5.065 r_lrange_other 5.064 r_scangle_it 1.985 r_scangle_other 1.985 r_mcangle_it 1.908 r_mcangle_other 1.908
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.425 r_dihedral_angle_4_deg 17.17 r_dihedral_angle_3_deg 13.387 r_dihedral_angle_1_deg 8.204 r_lrange_it 5.065 r_lrange_other 5.064 r_scangle_it 1.985 r_scangle_other 1.985 r_mcangle_it 1.908 r_mcangle_other 1.908 r_angle_refined_deg 1.442 r_angle_other_deg 1.335 r_scbond_it 1.186 r_scbond_other 1.186 r_mcbond_it 1.095 r_mcbond_other 1.095 r_symmetry_nbd_refined 0.244 r_nbd_other 0.22 r_nbd_refined 0.195 r_symmetry_nbd_other 0.18 r_nbtor_refined 0.162 r_symmetry_xyhbond_nbd_refined 0.15 r_xyhbond_nbd_refined 0.149 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.073 r_metal_ion_refined 0.072 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5350 Nucleic Acid Atoms Solvent Atoms 588 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing