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N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH N-(2-(1H-imidazol-4-yl)ethyl)-4-acetamido-3-(benzyloxy)benzamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.2M BTP pH 6.5, 20% PEG3350, 0.2M NaKtartrate
Crystal Properties Matthews coefficient Solvent content 2.15 42.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.492 α = 90 b = 44.144 β = 90 c = 78.567 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2013-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 78.57 96.7 0.034 21.7 3.5 61018
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.59 81.2 0.276 4 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.59 29.363 17554 884 96.086 0.168 0.165 0.1762 0.2181 0.2249 19.861
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.663 -0.071 -0.592
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.223 r_dihedral_angle_3_deg 12.998 r_dihedral_angle_4_deg 12.335 r_lrange_it 6.861 r_lrange_other 6.859 r_dihedral_angle_1_deg 5.878 r_scangle_it 2.744 r_scangle_other 2.742 r_mcangle_it 1.796 r_mcangle_other 1.794
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.223 r_dihedral_angle_3_deg 12.998 r_dihedral_angle_4_deg 12.335 r_lrange_it 6.861 r_lrange_other 6.859 r_dihedral_angle_1_deg 5.878 r_scangle_it 2.744 r_scangle_other 2.742 r_mcangle_it 1.796 r_mcangle_other 1.794 r_scbond_it 1.655 r_scbond_other 1.655 r_angle_other_deg 1.211 r_angle_refined_deg 1.175 r_mcbond_it 1.101 r_mcbond_other 1.099 r_nbd_refined 0.193 r_nbtor_refined 0.17 r_symmetry_nbd_refined 0.168 r_symmetry_nbd_other 0.161 r_nbd_other 0.157 r_xyhbond_nbd_refined 0.126 r_symmetry_xyhbond_nbd_refined 0.125 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.06 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1062 Nucleic Acid Atoms Solvent Atoms 310 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling