6Z5E

Crystal structure of haspin (GSG2) in complex with macrocycle ODS2004093


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4QTC 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6277.1560%(v/v) MPD, 0.1M SPG pH 6.0
Crystal Properties
Matthews coefficientSolvent content
3.0759.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.76α = 90
b = 78.8β = 90
c = 81.71γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 2M2012-07-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.9200DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.556.72199.30.0720.0810.03610.44.88026380263
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5899.70.7760.7760.8690.38314.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4qtc1.528.3676162403299.090.15850.15720.1831RANDOM18.394
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.33-0.780.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.387
r_dihedral_angle_4_deg12.621
r_dihedral_angle_3_deg11.718
r_dihedral_angle_1_deg6.367
r_angle_refined_deg1.692
r_angle_other_deg0.979
r_chiral_restr0.104
r_bond_refined_d0.015
r_gen_planes_refined0.009
r_bond_other_d0.003
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.387
r_dihedral_angle_4_deg12.621
r_dihedral_angle_3_deg11.718
r_dihedral_angle_1_deg6.367
r_angle_refined_deg1.692
r_angle_other_deg0.979
r_chiral_restr0.104
r_bond_refined_d0.015
r_gen_planes_refined0.009
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2627
Nucleic Acid Atoms
Solvent Atoms429
Heterogen Atoms52

Software

Software
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
iMOSFLMdata reduction
PHASERphasing