☰ Navigation Tabs
Mec1-Ddc2 (F2244L mutant) in complex with Mg AMP-PNP (State II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6Z2W
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 10.6537 f_angle_d 1.0751 f_chiral_restr 0.0615 f_bond_d 0.0072 f_plane_restr 0.0071
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 12205 Reported Resolution (Å) 3.2 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (6Z2W) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 51
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 81000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Gautomatch IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND MODEL FITTING Coot MODEL FITTING UCSF Chimera INITIAL EULER ASSIGNMENT RELION 3.0 FINAL EULER ASSIGNMENT RELION 3.0 FINAL EULER ASSIGNMENT cisTEM CLASSIFICATION RELION 3.0 RECONSTRUCTION cisTEM MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 900000 Template-based picking