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Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148R variant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RHF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 0.12M hexanediol, 0.12M butanol, 0.12M 1,2-propanediol, 0.12M propanol, 0.12M butanediol, 0.12M 1,3-propanediol, 0.1M MES, 0.1M Imid, pH 6.5, 20%PEG500, 10% PEG20000
Crystal Properties Matthews coefficient Solvent content 2.48 50.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.419 α = 90 b = 110.169 β = 90 c = 38.963 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9184 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.632 39.78 71.7 1 16.7 6.4 22625
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.632 1.76 18 0.746 2.4 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6rhf 1.65 39.78 20790 1138 71.57 0.1838 0.1822 0.1915 0.2117 0.2185 RANDOM 25.248
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.07 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.798 r_dihedral_angle_4_deg 13.378 r_dihedral_angle_3_deg 10.558 r_dihedral_angle_1_deg 6.67 r_angle_refined_deg 1.218 r_angle_other_deg 1.209 r_chiral_restr 0.039 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_gen_planes_other 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.798 r_dihedral_angle_4_deg 13.378 r_dihedral_angle_3_deg 10.558 r_dihedral_angle_1_deg 6.67 r_angle_refined_deg 1.218 r_angle_other_deg 1.209 r_chiral_restr 0.039 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_gen_planes_other 0.001 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1570 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 63
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing