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Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148N variant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RHF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 0.06M Magnesium chloride hexahydrate, 0.06M Calcium chloride dihydrate, 0.1M MES, 0.1M Imid, pH 6.5, 20% PEG500, 10% PEG20000
Crystal Properties Matthews coefficient Solvent content 2.34 47.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.718 α = 90 b = 110.559 β = 90 c = 38.985 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 PIXEL DECTRIS PILATUS 6M-F 2018-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9184 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 110.56 98.6 0.078 0.081 0.022 0.999 18.5 12.9 41453
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 99.9 1.303 1.355 0.367 0.791 13.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6rhf 1.45 55.28 39327 2070 98.49 0.1788 0.1777 0.199 0.2105 RANDOM 15.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 -0.25 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.683 r_dihedral_angle_4_deg 14.206 r_dihedral_angle_3_deg 11.482 r_dihedral_angle_1_deg 7.06 r_angle_other_deg 1.356 r_angle_refined_deg 1.306 r_chiral_restr 0.056 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.683 r_dihedral_angle_4_deg 14.206 r_dihedral_angle_3_deg 11.482 r_dihedral_angle_1_deg 7.06 r_angle_other_deg 1.356 r_angle_refined_deg 1.306 r_chiral_restr 0.056 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_gen_planes_other 0.002 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1592 Nucleic Acid Atoms Solvent Atoms 210 Heterogen Atoms 74
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing