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BRD9 with Biphenyl-methylamino-dimethylpyridazinone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.10M morpheus buffer 1 (1M pH 6.5), 30.00% morpheus EDO_P8K (60%) 0.10M Morpheus Amino Acids (1M)
Crystal Properties Matthews coefficient Solvent content 2.4 48.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.524 α = 71.007 b = 33.885 β = 74.35 c = 39.614 γ = 74.205
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2012-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.541
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 31.38 91.4 0.02 40.8 3.7 11790
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.77 83.4 0.035 23.3 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.684 27.89 11766 572 91.252 0.154 0.1523 0.1601 0.185 0.1902 18.191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.045 0.058 -0.05 -0.086 -0.074 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.227 r_dihedral_angle_4_deg 11.403 r_dihedral_angle_3_deg 10.838 r_lrange_it 6.424 r_lrange_other 6.422 r_dihedral_angle_1_deg 3.984 r_scangle_it 3.012 r_scangle_other 3.01 r_mcangle_other 2.152 r_mcangle_it 2.138
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.227 r_dihedral_angle_4_deg 11.403 r_dihedral_angle_3_deg 10.838 r_lrange_it 6.424 r_lrange_other 6.422 r_dihedral_angle_1_deg 3.984 r_scangle_it 3.012 r_scangle_other 3.01 r_mcangle_other 2.152 r_mcangle_it 2.138 r_scbond_it 1.81 r_scbond_other 1.809 r_mcbond_it 1.285 r_angle_other_deg 1.261 r_mcbond_other 1.243 r_angle_refined_deg 1.172 r_nbd_other 0.227 r_nbd_refined 0.188 r_symmetry_nbd_other 0.176 r_nbtor_refined 0.174 r_symmetry_nbd_refined 0.17 r_xyhbond_nbd_refined 0.148 r_symmetry_xyhbond_nbd_refined 0.139 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.059 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 821 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling