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Crystal structure of the M295F variant of Ssl1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4M3H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 50 mM HEPES, pH 7.0, 1.4 M ammonium sulfate, 10 mM [Co(NH3)6]Cl3
Crystal Properties Matthews coefficient Solvent content 2.03 39.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.405 α = 90 b = 104.446 β = 90 c = 162.179 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99 0.999 13.05 6.9 268845
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.59 0.704
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4M3H 1.5 48.056 138706 1457 98.715 0.176 0.176 0.1784 0.1986 0.2019 22.507
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.314 -0.762 2.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.702 r_dihedral_angle_4_deg 17.93 r_dihedral_angle_3_deg 12.999 r_dihedral_angle_1_deg 7.447 r_lrange_other 5.633 r_lrange_it 5.631 r_scangle_it 3.921 r_scangle_other 3.921 r_mcangle_it 3.183 r_mcangle_other 3.183
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.702 r_dihedral_angle_4_deg 17.93 r_dihedral_angle_3_deg 12.999 r_dihedral_angle_1_deg 7.447 r_lrange_other 5.633 r_lrange_it 5.631 r_scangle_it 3.921 r_scangle_other 3.921 r_mcangle_it 3.183 r_mcangle_other 3.183 r_scbond_it 2.762 r_scbond_other 2.762 r_mcbond_it 2.231 r_mcbond_other 2.223 r_angle_refined_deg 1.75 r_angle_other_deg 1.509 r_nbd_refined 0.202 r_symmetry_nbd_other 0.196 r_nbd_other 0.194 r_nbtor_refined 0.171 r_symmetry_xyhbond_nbd_refined 0.162 r_symmetry_xyhbond_nbd_other 0.146 r_metal_ion_refined 0.127 r_xyhbond_nbd_refined 0.124 r_symmetry_nbd_refined 0.116 r_chiral_restr 0.084 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6303 Nucleic Acid Atoms Solvent Atoms 516 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing