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Meta-Carborane propyl-sulfonamide in complex with CA IX mimic
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OGP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.1 41.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.971 α = 90 b = 41.338 β = 103.75 c = 72.742 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 40.77 97.9 0.043 0.05 0.999 13.41 3.681 85548 18.197
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.21 95 1.028 1.214 0.667 0.93 3.446
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5OGP 1.2 40.77 72948 1836 98.52 0.1457 0.1452 0.153 0.1644 0.175 RANDOM 17.013
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.4 0.72 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.226 r_sphericity_free 25.094 r_dihedral_angle_4_deg 18.488 r_sphericity_bonded 10.992 r_dihedral_angle_3_deg 10.963 r_rigid_bond_restr 9.823 r_dihedral_angle_1_deg 7.088 r_angle_other_deg 5.494 r_angle_refined_deg 1.648 r_chiral_restr 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.226 r_sphericity_free 25.094 r_dihedral_angle_4_deg 18.488 r_sphericity_bonded 10.992 r_dihedral_angle_3_deg 10.963 r_rigid_bond_restr 9.823 r_dihedral_angle_1_deg 7.088 r_angle_other_deg 5.494 r_angle_refined_deg 1.648 r_chiral_restr 0.109 r_gen_planes_other 0.017 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2025 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PDB_EXTRACT data extraction FFT phasing