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Translation initiation factor 4E in complex with 4-Cl-Bn7GpppG mRNA 5' cap analog
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L8B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 0.1 M Bicine pH 8.5, 0.2 M sodium formate, 19 % w/v PEGMME 5000
Crystal Properties Matthews coefficient Solvent content 2.38 48.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.35 α = 85.276 b = 38.39 β = 88.416 c = 148.08 γ = 77.234
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.66 50 93.59 0.1122 0.1258 0.0555 0.991 10.32 4.7 22090 37.7561760788
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.66 2.755 60.42 0.571 0.6803 0.3611 0.764 2.04 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1L8B 2.66005667871 49.1900006675 1.9795919456 22081 814 93.6032217041 0.203474516796 0.201483739807 0.2026 0.255269123128 0.2476 44.7187982624
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 10.8629456457 f_angle_d 0.746652085593 f_chiral_restr 0.360645201754 f_bond_d 0.00618132238273 f_plane_restr 0.00337122667591
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5750 Nucleic Acid Atoms Solvent Atoms 242 Heterogen Atoms 172
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHENIX phasing