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Cap-binding domain of SFTSV L protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6QHG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Final concentrations of components: 16.6 mM Sodium phosphate (pH 6.5), 50mM NaCl, 6.6% (w/v) Glycerol, 4.7% (v/v) 2-Butanol, 100mM Mes (pH 6.0), 18.3% (w/v) Polyethylene glycol 4000, 1.3 mM m7GTP
Protein concentration: SFTSV CBD 12.4 mg/ml
Crystal Properties Matthews coefficient Solvent content 2.15 42.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.974 α = 90 b = 44.715 β = 90 c = 63.515 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 0.9763 PETRA III, EMBL c/o DESY P14 (MX2)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 50 97.59 0.03094 0.03223 1 41.6 13.2 321482 16.17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.398 88.8 0.3684 0.3857 0.953 6.32 11.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6qhg 1.35 33.22 1.36 24448 1189 97.53 0.166 0.1654 0.1666 0.1768 0.1777 21.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.819 f_angle_d 1.1892 f_chiral_restr 0.0851 f_bond_d 0.0087 f_plane_restr 0.0053
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 858 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms 34
Software Software Software Name Purpose PHENIX refinement Coot model building XDS data reduction Aimless data scaling PHENIX phasing