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Structure of SUMO1-ML00752641 adduct bound to SAE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Y8R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 50 mM BisTris, pH 6.5, 50 mM Ammonium Sulfate, 30% pentaerythritol ethoxylate (Hampton Index 57)
Crystal Properties Matthews coefficient Solvent content 2.21 44.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.224 α = 90 b = 72.4 β = 93.293 c = 127.407 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2011-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.38 95.62 0.07504 0.996 12.96 3.7 69609
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.071 0.7795 0.66 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1Y8R 2 19.38 68529 6927 95.641 0.244 0.2388 0.239 0.2873 0.2878 40.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.062 0.205 -0.109 0.147
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.205 r_dihedral_angle_4_deg 19.134 r_dihedral_angle_3_deg 17.991 r_lrange_it 7.452 r_dihedral_angle_1_deg 6.584 r_scangle_it 5.452 r_mcangle_it 4.581 r_scbond_it 3.937 r_mcbond_it 3.265 r_angle_refined_deg 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.205 r_dihedral_angle_4_deg 19.134 r_dihedral_angle_3_deg 17.991 r_lrange_it 7.452 r_dihedral_angle_1_deg 6.584 r_scangle_it 5.452 r_mcangle_it 4.581 r_scbond_it 3.937 r_mcbond_it 3.265 r_angle_refined_deg 1.5 r_nbtor_refined 0.31 r_symmetry_nbd_refined 0.23 r_nbd_refined 0.229 r_symmetry_xyhbond_nbd_refined 0.164 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.112 r_gen_planes_refined 0.008 r_bond_refined_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5839 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing