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Structure of SUMO1-ML00789344 adduct bound to SAE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Y8R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 50 mM BisTris, pH 6.5, 50 mM Ammonium Sulfate, 30% pentaerythritol ethoxylate (Hampton Index 57)
Crystal Properties Matthews coefficient Solvent content 2.21 44.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.133 α = 90 b = 72.947 β = 92.933 c = 126.586 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2013-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.226 47.004 97.02 0.064 18.48 3.7 50291
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.23 2.31 0.664 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1Y8R 2.226 43.31 50291 2554 96.613 0.196 0.1939 0.1942 0.2436 0.2446 63.594
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.308 2.042 0.534 -0.433
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.356 r_dihedral_angle_3_deg 18.508 r_dihedral_angle_4_deg 16.467 r_lrange_it 11.375 r_scangle_it 8.498 r_mcangle_it 7.713 r_dihedral_angle_1_deg 6.891 r_scbond_it 6.091 r_mcbond_it 5.317 r_angle_refined_deg 1.477
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.356 r_dihedral_angle_3_deg 18.508 r_dihedral_angle_4_deg 16.467 r_lrange_it 11.375 r_scangle_it 8.498 r_mcangle_it 7.713 r_dihedral_angle_1_deg 6.891 r_scbond_it 6.091 r_mcbond_it 5.317 r_angle_refined_deg 1.477 r_nbtor_refined 0.314 r_nbd_refined 0.225 r_symmetry_nbd_refined 0.194 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.108 r_symmetry_xyhbond_nbd_refined 0.084 r_bond_refined_d 0.007 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6479 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing