6X8W

Structure of ArrX Y138A mutant protein bound to sulfate from Chrysiogenes arsenatis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.72930.2 M lithium sulfate, 0.1 M Tris pH 8.7, 27% (w/v) PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.0239.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.153α = 90
b = 53.492β = 90
c = 90.184γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2018-04-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX20.9537Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9746.0199.80.999116.618755
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.972.020.802

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6X6B1.97246.0081773797099.7920.1760.17460.20728.71
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.0650.5260.539
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.887
r_dihedral_angle_3_deg13.142
r_dihedral_angle_4_deg11.96
r_lrange_it7.699
r_lrange_other7.57
r_dihedral_angle_1_deg5.701
r_scangle_it4.282
r_scangle_other4.279
r_scbond_it2.817
r_scbond_other2.748
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.887
r_dihedral_angle_3_deg13.142
r_dihedral_angle_4_deg11.96
r_lrange_it7.699
r_lrange_other7.57
r_dihedral_angle_1_deg5.701
r_scangle_it4.282
r_scangle_other4.279
r_scbond_it2.817
r_scbond_other2.748
r_mcangle_other2.333
r_mcangle_it2.332
r_mcbond_it1.648
r_mcbond_other1.646
r_angle_refined_deg1.434
r_angle_other_deg1.301
r_symmetry_xyhbond_nbd_refined0.466
r_xyhbond_nbd_refined0.212
r_nbd_other0.203
r_nbd_refined0.192
r_symmetry_nbd_refined0.187
r_symmetry_nbd_other0.175
r_nbtor_refined0.165
r_symmetry_nbtor_other0.077
r_symmetry_xyhbond_nbd_other0.075
r_chiral_restr0.068
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2013
Nucleic Acid Atoms
Solvent Atoms85
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing