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HIV Integrase core domain in complex with inhibitor 3-methyl-2-{5-methyl-2-[2-(thiophen-2-yl)ethynyl]-1- benzofuran-3-yl}butanoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 2.2 M ammonium sulfate, 100 mM potassium iodide
Crystal Properties Matthews coefficient Solvent content 2.07 40.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.111 α = 90 b = 46.111 β = 90 c = 140.22 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2015-05-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 46.74 99.7 0.079 0.082 0.02 1 34 16.5 7524 31.57
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.35 96.7 0.703 0.724 0.174 0.948 4.9 16.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.28 43.8 6749 715 99.6 0.22511 0.21784 0.2181 0.2936 0.2944 RANDOM 38.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.11 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.906 r_dihedral_angle_4_deg 23.037 r_dihedral_angle_3_deg 18.611 r_dihedral_angle_1_deg 8.896 r_long_range_B_other 8.643 r_long_range_B_refined 8.642 r_scangle_other 5.143 r_mcangle_it 3.821 r_mcangle_other 3.818 r_scbond_it 3.778
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.906 r_dihedral_angle_4_deg 23.037 r_dihedral_angle_3_deg 18.611 r_dihedral_angle_1_deg 8.896 r_long_range_B_other 8.643 r_long_range_B_refined 8.642 r_scangle_other 5.143 r_mcangle_it 3.821 r_mcangle_other 3.818 r_scbond_it 3.778 r_scbond_other 3.775 r_mcbond_other 2.377 r_mcbond_it 2.376 r_angle_refined_deg 1.932 r_angle_other_deg 1.372 r_chiral_restr 0.098 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1031 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement Aimless data reduction Aimless data scaling REFMAC phasing