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Solution NMR Structure of 5'UTR Stem Loop B in DENV4 Flavivirus.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.8 mM N15_C13 Denv4 90% H2O/10% D2O 20 mM 6.0 1 atm 298 Bruker AVANCE 600 2 2D 1H-13C HSQC aliphatic 0.8 mM N15_C13 Denv4 90% H2O/10% D2O 20 mM 6.0 1 atm 298 Bruker AVANCE 600 3 2D 1H-13C HSQC aromatic 0.8 mM N15_C13 Denv4 90% H2O/10% D2O 20 mM 6.0 1 atm 298 Bruker AVANCE 600 4 2D 1H-1H NOESY 0.8 mM N15_C13 Denv4 90% H2O/10% D2O 20 mM 6.0 1 atm 298 Bruker AVANCE 800 5 2D 1H-1H TOCSY 0.8 mM N15_C13 Denv4 90% H2O/10% D2O 20 mM 6.0 1 atm 298 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 150 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard