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Crystal Structure of Y188G Variant of the Internal UBA Domain of HHR23A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 2.0M Ammonium sulfate 2 VAPOR DIFFUSION, SITTING DROP 293 2.0M Ammonium sulfate
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.164 α = 90 b = 31.164 β = 90 c = 40.53 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-01-29 M SINGLE WAVELENGTH 2 2 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.9795 SSRL BL9-2 2 SYNCHROTRON SSRL BEAMLINE BL9-2 1.77 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 31.16 98.95 0.07658 0.07961 0.02153 1 22.37 13.4 6875 11.23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.502 97.84 0.5901 0.615 0.1703 0.926 4.34 12.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.45 31.16 1.36 6875 697 98.96 0.1532 0.1498 0.1495 0.183 0.1834 15.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.328 f_angle_d 1.0683 f_chiral_restr 0.0904 f_bond_d 0.0112 f_plane_restr 0.0068
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 369 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 6
Software Software Software Name Purpose Blu-Ice data collection XDS data reduction Aimless data scaling HKL2Map phasing AutoSol phasing PHENIX model building Coot model building PHENIX refinement