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Engineered TTLL6 mutant bound to alpha-elongation analog
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4YLR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 100 mM Sodium Citrate, pH 6.2, 200 mM MgCl2, 12% Peg 20000
Crystal Properties Matthews coefficient Solvent content 3.31 66.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.038 α = 90 b = 109.491 β = 90.014 c = 171.7 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9774 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.08 46.16 99.6 0.06054 0.08561 0.0605 0.995 7.16 2 101188 57.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.08 3.194 98.36 0.2512 0.3552 0.251 0.918 2.65 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4YLR 3.08 46.16 0.01 99187 5094 98.51 0.2277 0.2259 0.223 0.2593 0.2575 68.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.1269 f_angle_d 0.5387 f_chiral_restr 0.0387 f_plane_restr 0.0025 f_bond_d 0.0018
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12026 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 328
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing