☰ Navigation Tabs
Tandem UU:GA mismatch within an RNA helix
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1.5 mM RNA 100% D2O 20 mM 6.8 1 atm 299 Varian INOVA 600 2 3D 1H-13C NOESY 1.3 mM [U-99% 13C; U-99% 15N] RNA 100% D2O 20 mM 6.8 1 atm 299 Varian INOVA 600 3 3D HCCH-COSY 1.3 mM [U-99% 13C; U-99% 15N] RNA 100% D2O 20 mM 6.8 1 atm 299 Varian INOVA 600 4 3D HCCH-TOCSY 1.3 mM [U-99% 13C; U-99% 15N] RNA 100% D2O 20 mM 6.8 1 atm 299 Varian INOVA 600 5 2D 1H-13C ct-HSQC 0.25 mM [U-99% 13C; U-99% 15N] RNA 100% D2O 20 mM 6.8 1 atm 299 Varian INOVA 600 6 2D 1H-15N HSQC 1.4 mM [U-99% 13C; U-99% 15N] RNA 90% H2O/10% D2O 20 mM 6.8 1 atm 285 Varian INOVA 600 7 2D 1H-13C ctep-HSQC 1.3 mM [U-99% 13C; U-99% 15N] RNA 100% D2O 20 mM 6.8 1 atm 299 Varian INOVA 500 8 2d H(CN)C 1.3 mM [U-99% 13C; U-99% 15N] RNA 100% D2O 20 mM 6.8 1 atm 299 Varian INOVA 600 9 2D H(N)CO 1.4 mM [U-99% 13C; U-99% 15N] RNA 90% H2O/10% D2O 20 mM 6.8 1 atm 285 Varian INOVA 600 10 2D 1H-1H NOESY 1.5 mM RNA 100% D2O 20 mM 6.8 1 atm 285 Varian INOVA 600 11 3D 1H-15N NOESY 1.4 mM [U-99% 13C; U-99% 15N] RNA 90% H2O/10% D2O 20 mM 6.8 1 atm 285 Varian INOVA 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 500
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 8 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment Felix Accelrys Software Inc. 4 peak picking Felix Accelrys Software Inc.