☰ Navigation Tabs
Crystal Structure of the wtBlc-split Protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QWD PDB entry 1QWD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 294 1.6 M ammonium sulfate, 0.1 M MES, pH 4.5, supplemented with 5% w/v n-Dodecyl-b-D-maltoside
Crystal Properties Matthews coefficient Solvent content 2.43 49.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.416 α = 90 b = 68.416 β = 90 c = 217.748 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2018-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 59.25 99.5 0.15 0.051 8.1 9 44856 30.626
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.97 86.2 1.627 0.534 2.1 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1QWD 1.94 59.25 42637 2141 99.31 0.2139 0.2121 0.221 0.2494 0.2557 RANDOM 32.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.05 -0.11 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.376 r_dihedral_angle_4_deg 16.624 r_dihedral_angle_3_deg 15.13 r_dihedral_angle_1_deg 7.516 r_mcangle_it 4.003 r_mcbond_it 2.933 r_mcbond_other 2.895 r_angle_other_deg 2.361 r_angle_refined_deg 1.705 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.376 r_dihedral_angle_4_deg 16.624 r_dihedral_angle_3_deg 15.13 r_dihedral_angle_1_deg 7.516 r_mcangle_it 4.003 r_mcbond_it 2.933 r_mcbond_other 2.895 r_angle_other_deg 2.361 r_angle_refined_deg 1.705 r_chiral_restr 0.078 r_bond_other_d 0.035 r_gen_planes_other 0.018 r_bond_refined_d 0.01 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3707 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 108
Software Software Software Name Purpose REFMAC refinement xia2 data scaling MOLREP phasing PDB_EXTRACT data extraction xia2 data reduction