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C3 symmetric peptide design number 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 0.1 M Cadmium chloride, 0.1 M Sodium acetate pH 4.6, 30% PEG 400
Crystal Properties Matthews coefficient Solvent content 1.53 19.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.03 α = 90 b = 51.03 β = 90 c = 36.02 γ = 120
Symmetry Space Group P 3 1 c
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.77490 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.9 25.51 78.7 0.086 0.112 0.989 5.85 2.242 30646 7.496
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.9 0.92 66.4 0.464 0.572 0.854 2.16 2.388
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 0.9 25.51 27581 3065 78.73 0.1205 0.118 0.1185 0.1429 0.143 RANDOM 7.195
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.04 -0.08 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.175 r_dihedral_angle_3_deg 12.935 r_dihedral_angle_1_deg 5.572 r_rigid_bond_restr 3.625 r_angle_refined_deg 2.116 r_angle_other_deg 0.823 r_chiral_restr 0.141 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.175 r_dihedral_angle_3_deg 12.935 r_dihedral_angle_1_deg 5.572 r_rigid_bond_restr 3.625 r_angle_refined_deg 2.116 r_angle_other_deg 0.823 r_chiral_restr 0.141 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 621 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 31
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction SHELXD phasing