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C3 symmetric peptide design number 2, Baby Basil
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 0.2M zinc acetate, 0.1 M imidazole pH 8.0, 2.5 M sodium chloride
Crystal Properties Matthews coefficient Solvent content 2.23 44.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.72 α = 90 b = 24.72 β = 90 c = 19.59 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.77490 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.95 21.41 94.1 0.063 0.075 0.997 8.44 2.865 7972 11.649
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.95 0.97 95.3 1.122 1.398 0.393 1.16 2.531
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 0.95 21.408 7956 834 94.265 0.16 0.1593 0.1562 0.1618 0.1602 13.336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.19 0.38 -1.234
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 18.716 r_dihedral_angle_3_deg 12.844 r_dihedral_angle_1_deg 7.747 r_dihedral_angle_2_deg 6.423 r_scangle_it 2.511 r_scangle_other 2.511 r_scbond_other 2.177 r_scbond_it 2.123 r_angle_refined_deg 1.88 r_lrange_other 1.809
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 18.716 r_dihedral_angle_3_deg 12.844 r_dihedral_angle_1_deg 7.747 r_dihedral_angle_2_deg 6.423 r_scangle_it 2.511 r_scangle_other 2.511 r_scbond_other 2.177 r_scbond_it 2.123 r_angle_refined_deg 1.88 r_lrange_other 1.809 r_lrange_it 1.703 r_mcangle_it 1.286 r_mcangle_other 1.26 r_mcbond_it 0.909 r_mcbond_other 0.907 r_rigid_bond_restr 0.865 r_symmetry_nbd_refined 0.745 r_symmetry_xyhbond_nbd_refined 0.464 r_nbd_refined 0.452 r_angle_other_deg 0.447 r_symmetry_nbd_other 0.229 r_nbd_other 0.172 r_nbtor_refined 0.14 r_metal_ion_refined 0.115 r_chiral_restr 0.106 r_symmetry_nbtor_other 0.092 r_symmetry_metal_ion_refined 0.033 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 52 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PDB_EXTRACT data extraction SHELXD phasing