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Complex of ch28/11 Fab and SSEA-4 (monoclinic form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UG7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 PEG 8000, sodium cacodylate, magnesium acetate
Crystal Properties Matthews coefficient Solvent content 2.8 55.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.464 α = 90 b = 69.167 β = 94.46 c = 97.55 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.954 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 50 99.3 0.07 10.1 3.4 39580
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 0.57
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6UG7 1.89 50 39578 1996 99.19 0.1786 0.1759 0.1836 0.2304 0.2341 RANDOM 41.9978
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.59 -1.22 0.71 1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.295 r_dihedral_angle_4_deg 26.576 r_dihedral_angle_3_deg 15.362 r_dihedral_angle_1_deg 7.452 r_mcangle_it 4.734 r_angle_other_deg 3.84 r_mcbond_it 3.62 r_mcbond_other 3.613 r_angle_refined_deg 1.908 r_chiral_restr 0.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.295 r_dihedral_angle_4_deg 26.576 r_dihedral_angle_3_deg 15.362 r_dihedral_angle_1_deg 7.452 r_mcangle_it 4.734 r_angle_other_deg 3.84 r_mcbond_it 3.62 r_mcbond_other 3.613 r_angle_refined_deg 1.908 r_chiral_restr 0.116 r_bond_refined_d 0.018 r_gen_planes_other 0.018 r_gen_planes_refined 0.009 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3201 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHENIX phasing