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Crystal structure of a GH128 (subgroup III) curdlan-specific exo-beta-1,3-glucanase from Blastomyces gilchristii (BgGH128_III) in complex with glucose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.05 M Potassium di-hydrogen phosphate 24% Polyethylene glycol 8,000
Crystal Properties Matthews coefficient Solvent content 1.79 31.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.46 α = 102.97 b = 48.928 β = 89.34 c = 57.757 γ = 93.76
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.458540 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 41.2 94.2 0.997 11.51 3.42 31291
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.96 0.717
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 41.2 27514 1443 87.23 0.1666 0.1639 0.1759 0.2168 0.2254 RANDOM 24.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.488 r_dihedral_angle_4_deg 27.934 r_dihedral_angle_3_deg 13.761 r_dihedral_angle_1_deg 7.792 r_angle_other_deg 2.441 r_mcangle_it 2.275 r_angle_refined_deg 1.82 r_mcbond_it 1.461 r_mcbond_other 1.46 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.488 r_dihedral_angle_4_deg 27.934 r_dihedral_angle_3_deg 13.761 r_dihedral_angle_1_deg 7.792 r_angle_other_deg 2.441 r_mcangle_it 2.275 r_angle_refined_deg 1.82 r_mcbond_it 1.461 r_mcbond_other 1.46 r_chiral_restr 0.088 r_bond_other_d 0.036 r_gen_planes_other 0.017 r_bond_refined_d 0.013 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3505 Nucleic Acid Atoms Solvent Atoms 315 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing