6U4M
Solution structure of paxillin LIM4
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCO | 1.45 mM [U-13C; U-15N] Paxillin LIM4 | 95% H2O/5% D2O | 50mM NaCl mM | 6.8 | ambient | 298 | Bruker AVANCE III 850 |
2 | 3D HNCACB | 1.45 mM [U-13C; U-15N] Paxillin LIM4 | 95% H2O/5% D2O | 50mM NaCl mM | 6.8 | ambient | 298 | Bruker AVANCE III 850 |
3 | 3D CBCA(CO)NH | 1.45 mM [U-13C; U-15N] Paxillin LIM4 | 95% H2O/5% D2O | 50mM NaCl mM | 6.8 | ambient | 298 | Bruker AVANCE III 850 |
4 | 3D CCCONH | 1.45 mM [U-13C; U-15N] Paxillin LIM4 | 95% H2O/5% D2O | 50mM NaCl mM | 6.8 | ambient | 298 | Bruker AVANCE III 850 |
5 | 3D HCCH-TOCSY | 1.45 mM [U-13C; U-15N] Paxillin LIM4 | 95% H2O/5% D2O | 50mM NaCl mM | 6.8 | ambient | 298 | Bruker AVANCE III 850 |
7 | 3D HCCCONH | 1.45 mM [U-13C; U-15N] Paxillin LIM4 | 95% H2O/5% D2O | 50mM NaCl mM | 6.8 | ambient | 298 | Bruker AVANCE III 800 |
6 | 3D 15N/13C-edited NOESY | 1.45 mM [U-13C; U-15N] Paxillin LIM4 | 95% H2O/5% D2O | 50mM NaCl mM | 6.8 | ambient | 298 | Bruker AVANCE III 850 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 850 |
2 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | peak picking | PIPP | Garrett | |
5 | chemical shift assignment | PASA | Xu, Wang, Yang, Vaynberg, and Qin | |
6 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
7 | data analysis | TALOS | Cornilescu, Delaglio and Bax |