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Leishmania major N-myristoyltransferase in complex with indazole inhibitor IMP-918
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 30% PEG 1500, 0.2 M NaCl, 0.1 M Na cacodylate, pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.23 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.379 α = 90 b = 91.899 β = 113.697 c = 53.609 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2013-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 49 99.3 0.034 14.8 4 83675
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 91.6 0.802 1.3 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.4 49 83602 4182 99.205 0.207 0.205 0.205 0.2434 0.2433 25.298
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.823 -0.286 1.115 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.34 r_dihedral_angle_4_deg 19.779 r_dihedral_angle_3_deg 15.244 r_dihedral_angle_1_deg 6.353 r_lrange_it 5.423 r_scangle_it 4.112 r_mcangle_it 3.04 r_scbond_it 2.879 r_mcbond_it 2.267 r_angle_refined_deg 1.959
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.34 r_dihedral_angle_4_deg 19.779 r_dihedral_angle_3_deg 15.244 r_dihedral_angle_1_deg 6.353 r_lrange_it 5.423 r_scangle_it 4.112 r_mcangle_it 3.04 r_scbond_it 2.879 r_mcbond_it 2.267 r_angle_refined_deg 1.959 r_nbtor_refined 0.32 r_symmetry_nbd_refined 0.222 r_nbd_refined 0.214 r_symmetry_xyhbond_nbd_refined 0.152 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.125 r_bond_refined_d 0.011 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3354 Nucleic Acid Atoms Solvent Atoms 406 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing