6TTC
Haddock model of NDM-1/myricetin complex
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 320 uM [U-13C; U-15N] NDM-1 | 90% H2O/10% D2O | 150 mM | 7 | 1 atm | 293 | Bruker AVANCE II 600 |
2 | 2D 1H-15N HSQC | 320 uM [U-13C; U-15N] NDM-1 | 90% H2O/10% D2O | 150 mM | 7 | 1 atm | 293 | Bruker AVANCE III 800 |
3 | 3D HNCO | 320 uM [U-13C; U-15N] NDM-1 | 90% H2O/10% D2O | 150 mM | 7 | 1 atm | 293 | Bruker AVANCE II 600 |
4 | 3D HNCA | 320 uM [U-13C; U-15N] NDM-1 | 90% H2O/10% D2O | 150 mM | 7 | 1 atm | 293 | Bruker AVANCE II 600 |
5 | 3D HNCACB | 320 uM [U-13C; U-15N] NDM-1 | 90% H2O/10% D2O | 150 mM | 7 | 1 atm | 293 | Bruker AVANCE II 600 |
8 | HNCOCA | 320 uM [U-13C; U-15N] NDM-1 | 90% H2O/10% D2O | 150 mM | 7 | 1 atm | 293 | Bruker AVANCE II 600 |
7 | HNCOCACB | 320 uM [U-13C; U-15N] NDM-1 | 90% H2O/10% D2O | 150 mM | 7 | 1 atm | 293 | Bruker AVANCE II 600 |
6 | HNCACO | 320 uM [U-13C; U-15N] NDM-1 | 90% H2O/10% D2O | 150 mM | 7 | 1 atm | 293 | Bruker AVANCE II 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE II | 600 |
2 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | HADDOCK |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 4 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 3.5 | Bruker Biospin |
2 | chemical shift assignment | CcpNmr Analysis | CCPN | |
3 | peak picking | CcpNmr Analysis | CCPN | |
4 | structure calculation | HADDOCK | Bonvin |