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N-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 5-(4-(4-fluorophenyl)-1H-imidazol-5-yl)-1-methylpyridin-2(1H)-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other not published
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1M Hepes pH 7.0, 24-28% PEG3350, 0.2M (NH4)2SO4
Crystal Properties Matthews coefficient Solvent content 2.01 38.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.79 α = 90 b = 55.85 β = 94.03 c = 67.44 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2010-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.97950 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 50.28 98.9 0.089 9 3.5 20095
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.38 99.3 0.233 4.9 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE not published 2.26 40.893 20092 1022 98.776 0.205 0.2018 0.2691 0.2973 54.194
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.174 -0.124 -0.213 0.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.861 r_dihedral_angle_4_deg 24.646 r_dihedral_angle_3_deg 13.444 r_lrange_it 9.226 r_lrange_other 9.225 r_scangle_it 6.756 r_scangle_other 6.755 r_mcangle_it 6.053 r_mcangle_other 6.052 r_dihedral_angle_1_deg 5.595
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.861 r_dihedral_angle_4_deg 24.646 r_dihedral_angle_3_deg 13.444 r_lrange_it 9.226 r_lrange_other 9.225 r_scangle_it 6.756 r_scangle_other 6.755 r_mcangle_it 6.053 r_mcangle_other 6.052 r_dihedral_angle_1_deg 5.595 r_scbond_it 4.452 r_scbond_other 4.45 r_mcbond_it 4.155 r_mcbond_other 4.148 r_angle_refined_deg 1.188 r_angle_other_deg 1.174 r_symmetry_xyhbond_nbd_refined 0.222 r_nbd_other 0.215 r_nbd_refined 0.182 r_symmetry_nbd_other 0.172 r_xyhbond_nbd_refined 0.166 r_nbtor_refined 0.165 r_symmetry_nbd_refined 0.155 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.05 r_symmetry_xyhbond_nbd_other 0.047 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2777 Nucleic Acid Atoms Solvent Atoms 332 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALA data scaling