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N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 5-(1-(1,3-dimethoxypropan-2-yl)-5-morpholino-1H-benzo[d]imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M Hepes pH 7.0, 24-28% PEG3350, 0.2M (NH4)2SO4
Crystal Properties Matthews coefficient Solvent content 2 38.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.931 α = 90 b = 55.606 β = 94.434 c = 68.023 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2009-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 25.73 99.9 0.057 13.5 3.5 33916
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.8 0.37 2.9 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.9 25.725 33915 1718 99.882 0.172 0.1702 0.1839 0.2135 0.2292 35.114
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.727 -0.647 -0.87 -0.748
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.547 r_dihedral_angle_4_deg 23.31 r_dihedral_angle_3_deg 12.243 r_lrange_it 7.783 r_lrange_other 7.782 r_scangle_it 5.41 r_scangle_other 5.409 r_dihedral_angle_1_deg 5.26 r_mcangle_it 4.043 r_mcangle_other 4.042
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.547 r_dihedral_angle_4_deg 23.31 r_dihedral_angle_3_deg 12.243 r_lrange_it 7.783 r_lrange_other 7.782 r_scangle_it 5.41 r_scangle_other 5.409 r_dihedral_angle_1_deg 5.26 r_mcangle_it 4.043 r_mcangle_other 4.042 r_scbond_it 3.418 r_scbond_other 3.417 r_mcbond_other 2.701 r_mcbond_it 2.7 r_angle_refined_deg 1.2 r_angle_other_deg 1.198 r_nbd_other 0.223 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.188 r_symmetry_xyhbond_nbd_refined 0.178 r_nbtor_refined 0.177 r_symmetry_nbd_other 0.173 r_symmetry_nbd_refined 0.154 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.056 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2750 Nucleic Acid Atoms Solvent Atoms 330 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALA data scaling