☰ Navigation Tabs
Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.8 277 0.1 M Sodium acetate pH 5.8
0.125 M Magnesium chloride
Crystal Properties Matthews coefficient Solvent content 3.3 62.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.368 α = 90 b = 110.368 β = 90 c = 83.863 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.112 63.038 83.3 0.127 0.999 13.8 10.1 19218
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.112 2.324 69.9 1.857 0.571 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIR FREE R-VALUE 2.112 63.038 19218 889 52.055 0.178 0.1758 0.1759 0.2343 0.2345 45.574
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 -0.14 0.454
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.581 r_dihedral_angle_4_deg 23.145 r_dihedral_angle_3_deg 17.43 r_lrange_other 8.898 r_lrange_it 8.882 r_dihedral_angle_1_deg 6.99 r_scangle_it 6.3 r_scangle_other 6.298 r_mcangle_it 5.304 r_mcangle_other 5.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.581 r_dihedral_angle_4_deg 23.145 r_dihedral_angle_3_deg 17.43 r_lrange_other 8.898 r_lrange_it 8.882 r_dihedral_angle_1_deg 6.99 r_scangle_it 6.3 r_scangle_other 6.298 r_mcangle_it 5.304 r_mcangle_other 5.304 r_scbond_it 3.896 r_scbond_other 3.895 r_mcbond_it 3.493 r_mcbond_other 3.46 r_angle_other_deg 2.363 r_angle_refined_deg 1.531 r_symmetry_nbd_refined 0.263 r_nbd_other 0.23 r_symmetry_nbd_other 0.224 r_nbd_refined 0.218 r_symmetry_xyhbond_nbd_refined 0.178 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.073 r_symmetry_nbtor_other 0.072 r_symmetry_xyhbond_nbd_other 0.037 r_bond_other_d 0.034 r_gen_planes_other 0.008 r_bond_refined_d 0.007 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2735 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling REFMAC phasing