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Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.8 277 0.1 M Sodium acetate pH 5.8
0.125 M Magnesium chloride
Crystal Properties Matthews coefficient Solvent content 3.23 61.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.292 α = 90 b = 109.292 β = 90 c = 83.654 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.076 94.65 93.9 0.092 1 16.8 10.2 19985
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.076 2.344 76.2 1.197 0.747 1.9 9.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIR FREE R-VALUE 2.076 94.65 19984 934 55.128 0.175 0.1719 0.172 0.2401 0.24 47.262
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.04 0.08 -0.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.121 r_dihedral_angle_4_deg 21.312 r_dihedral_angle_3_deg 18.963 r_lrange_other 9.718 r_lrange_it 9.704 r_dihedral_angle_1_deg 7.586 r_scangle_it 7.291 r_scangle_other 7.289 r_mcangle_other 6.369 r_mcangle_it 6.361
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.121 r_dihedral_angle_4_deg 21.312 r_dihedral_angle_3_deg 18.963 r_lrange_other 9.718 r_lrange_it 9.704 r_dihedral_angle_1_deg 7.586 r_scangle_it 7.291 r_scangle_other 7.289 r_mcangle_other 6.369 r_mcangle_it 6.361 r_scbond_it 4.712 r_scbond_other 4.71 r_mcbond_it 4.307 r_mcbond_other 4.289 r_angle_other_deg 2.406 r_angle_refined_deg 1.617 r_nbd_other 0.263 r_nbd_refined 0.228 r_symmetry_nbd_other 0.225 r_symmetry_nbd_refined 0.209 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.168 r_symmetry_xyhbond_nbd_refined 0.108 r_symmetry_xyhbond_nbd_other 0.098 r_symmetry_nbtor_other 0.075 r_chiral_restr 0.073 r_bond_other_d 0.034 r_bond_refined_d 0.01 r_gen_planes_other 0.009 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2766 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling REFMAC phasing