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Ovine lactoglobulin complex with decanol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NLI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.30 M sodium citrate in 0.2 M Tris pH 8.5, decanol
Crystal Properties Matthews coefficient Solvent content 2.6 52.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.34 α = 90 b = 108.34 β = 90 c = 55.856 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD AGILENT ATLAS CCD 2014-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 14.08 99.6 0.058 0.997 12.8 2.7 25315
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.7 0.436 0.728 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4NLI 2 14.08 25296 1170 99.528 0.199 0.19855 0.1962 0.2018 0.2484 0.2495 RANDOM 30.665
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.048 0.024 0.048 -0.155
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.393 r_dihedral_angle_4_deg 15.566 r_dihedral_angle_3_deg 14.664 r_dihedral_angle_1_deg 7.124 r_lrange_it 5.032 r_lrange_other 5.02 r_scangle_it 3.305 r_scangle_other 3.304 r_mcangle_it 2.92 r_mcangle_other 2.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.393 r_dihedral_angle_4_deg 15.566 r_dihedral_angle_3_deg 14.664 r_dihedral_angle_1_deg 7.124 r_lrange_it 5.032 r_lrange_other 5.02 r_scangle_it 3.305 r_scangle_other 3.304 r_mcangle_it 2.92 r_mcangle_other 2.92 r_scbond_it 2.007 r_scbond_other 2.006 r_mcbond_it 1.788 r_mcbond_other 1.787 r_angle_refined_deg 1.686 r_angle_other_deg 1.312 r_symmetry_nbd_refined 0.29 r_nbd_refined 0.21 r_nbd_other 0.202 r_symmetry_nbd_other 0.19 r_xyhbond_nbd_refined 0.168 r_nbtor_refined 0.159 r_symmetry_xyhbond_nbd_refined 0.119 r_symmetry_xyhbond_nbd_other 0.088 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.077 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2276 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling PHASER phasing