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N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH iBET-BD1 (GSK778)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 20% PEG3350, 0.2M NaI, 0.1M BTP, 20C
Crystal Properties Matthews coefficient Solvent content 2.44 49.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.28 α = 90 b = 42.32 β = 90 c = 90.82 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2013-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.07253 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.28 45.41 93.3 0.0365 0.995 17 5.3 36156
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.28 1.33 60.2 0.187 0.901 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.28 38.36 36093 1801 93.033 0.194 0.1926 0.2 0.2122 0.2197 16.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.298 0.055 -0.353
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.712 r_dihedral_angle_3_deg 11.789 r_dihedral_angle_4_deg 10.888 r_dihedral_angle_1_deg 5.416 r_lrange_it 5.088 r_lrange_other 4.546 r_scangle_it 1.805 r_scangle_other 1.804 r_mcangle_it 1.284 r_mcangle_other 1.283
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.712 r_dihedral_angle_3_deg 11.789 r_dihedral_angle_4_deg 10.888 r_dihedral_angle_1_deg 5.416 r_lrange_it 5.088 r_lrange_other 4.546 r_scangle_it 1.805 r_scangle_other 1.804 r_mcangle_it 1.284 r_mcangle_other 1.283 r_angle_other_deg 1.159 r_angle_refined_deg 1.138 r_scbond_it 1.103 r_scbond_other 1.102 r_mcbond_it 0.752 r_mcbond_other 0.752 r_nbd_refined 0.188 r_symmetry_nbd_other 0.171 r_nbd_other 0.166 r_nbtor_refined 0.163 r_symmetry_nbd_refined 0.119 r_symmetry_xyhbond_nbd_refined 0.116 r_xyhbond_nbd_refined 0.097 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.056 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1043 Nucleic Acid Atoms Solvent Atoms 270 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling