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CRYSTAL STRUCTURE OF DHQ1 FROM SALMONELLA TYPHI COVALENTLY MODIFIED BY COMPOUND 9
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4UIO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 34% PEG 2000 MME, 100mM HEPES pH7
Crystal Properties Matthews coefficient Solvent content 2.04 39.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.582 α = 90 b = 114.158 β = 90 c = 42.478 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97918 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.23 57.08 99.9 0.131 0.143 0.058 0.992 8.9 6.2 66200
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.23 1.3 100 1.097 1.201 0.484 0.638 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4UIO 1.23 57.08 62328 3280 99.08 0.1526 0.1509 0.151 0.1847 0.1846 RANDOM 14.589
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.84 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.065 r_sphericity_free 25.629 r_dihedral_angle_4_deg 17.956 r_dihedral_angle_3_deg 11.974 r_sphericity_bonded 7.802 r_dihedral_angle_1_deg 5.562 r_angle_refined_deg 1.558 r_rigid_bond_restr 1.344 r_angle_other_deg 1.211 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.065 r_sphericity_free 25.629 r_dihedral_angle_4_deg 17.956 r_dihedral_angle_3_deg 11.974 r_sphericity_bonded 7.802 r_dihedral_angle_1_deg 5.562 r_angle_refined_deg 1.558 r_rigid_bond_restr 1.344 r_angle_other_deg 1.211 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1936 Nucleic Acid Atoms Solvent Atoms 326 Heterogen Atoms 25
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing