Experiment: 6SDY

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	310 uM [U-15N] Staufen1 dsRBD4, 310 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
2	2D 1H-15N HSQC	310 uM [U-15N] Staufen1 dsRBD4, 310 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
3	2D 1H-15N HSQC	310 uM [U-15N] Staufen1 dsRBD4, 310 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 950
4	2D 1H-13C HSQC aliphatic	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
5	2D 1H-13C HSQC aliphatic	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
6	3D HNCA	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
7	3D HNCO	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
8	3D CBCA(CO)NH	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
9	3D HNCACB	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
10	3D HBHA(CO)NH	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
11	3D HcccoNH-TOCSY	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
12	3D CccoNH-TOCSY	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
13	3D 1H-13C NOESY aliphatic	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
15	3D 1H-13C NOESY aromatic	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
16	3D 1H-15N NOESY	310 uM [U-15N] Staufen1 dsRBD4, 310 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 950
17	2D 1H-1H, 13C 2F-filtered NOESY	451 uM [U-13C; U-15N] Staufen1 dsRBD4, 451 uM Unlabelled hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
18	3D 13C 1F-filtered 2F-edited HSQC-NOESY	451 uM [U-13C; U-15N] Staufen1 dsRBD4, 451 uM Unlabelled hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
19	3D 1H-13C NOESY ribose	354 uM [U-15N] Staufen1 dsRBD4, 354 uM [U-13C] hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
20	2D 1H-1H TOCSY	310 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
21	2D 1H-1H NOESY	310 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
22	2D 1H-13C HSQC	478 uM [U-13C] hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
23	3D HCCH-TOCSY	478 uM [U-13C] hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
24	3D 1H-13C NOESY	478 uM [U-13C] hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
25	2D 1H-13C HSQC aliphatic	478 uM [U-13C] hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
26	2D 1H-1H, 13C 1F-filtered 2F-filtered NOESY	451 uM [U-13C; U-15N] Staufen1 dsRBD4, 451 uM Unlabelled hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
27	2D 1H-13C HSQC	354 uM [U-15N] Staufen1 dsRBD4, 354 uM [U-13C] hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
28	2D 1H-1H TOCSY	310 uM Unlabelled hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
29	2D 1H-1H NOESY	310 uM Unlabelled hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
30	3D HCCH-COSY aromatic	478 uM [U-13C] hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
31	2D 1H-13C HSQC aromatic	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 700
32	2D 1H-13C HSQC aromatic	405 uM [U-13C; U-15N] Staufen1 dsRBD4, 405 uM Unlabelled hARF1	90-95% H20/5-10% D20	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
33	2D 1H-13C HSQC aliphatic	451 uM [U-13C; U-15N] Staufen1 dsRBD4, 451 uM Unlabelled hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
34	2D 1H-13C HSQC aromatic	478 uM [U-13C] hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
35	2D 1H-13C HSQC ribose	354 uM [U-15N] Staufen1 dsRBD4, 354 uM [U-13C] hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850
36	2D 1H-13C HSQC aromatic	354 uM [U-15N] Staufen1 dsRBD4, 354 uM [U-13C] hARF1	100% D2O	50 mM	6.5	ambient atm	308	Bruker AVANCE III 850

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	700
2	Bruker	AVANCE III	850
3	Bruker	AVANCE III	950

NMR Refinement
Method	Details	Software
simulated annealing		Amber
na		PROCHECK / PROCHECK-NMR

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy and restraint violation
Conformers Calculated Total Number	50
Conformers Submitted Total Number	20
Representative Model	1 (medoid)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	Amber	AMBER14	Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2	structure calculation	CYANA	cyana-3.98.5	Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	CARA	cara_1.8.4	Keller, Damberger and Wuthrich
4	peak picking	CARA	cara_1.8.4	Keller, Damberger, Wuthrich
5	chemical shift assignment	Sparky	SPARKY3	Goddard and Kneller
6	structure calculation	ATNOS-CANDID	UNIO 2.0.3	Herrmann and Guntert
7	peak picking	Sparky	SPARKY3	Goddard and Kneller
8	collection	TopSpin	TOPSPIN3.2	Bruker Biospin
9	processing	TopSpin	TOPSPIN3.2	Bruker Biospin
10	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
11	refinement	PROCHECK / PROCHECK-NMR		Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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6SDY

Solution structure of Staufen1 dsRBD4 - hARF1 SBS dsRNA complex.